PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65858.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 246aa    MW: 27639.1 Da    PI: 4.7484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65858.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-091446135
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                     rg W++eEd ll +a k +G++ W+ Ia+ +  gR
       EPS65858.1 14 RGGWSPEEDVLLCEAQKIFGNR-WTEIAKVVS-GR 46
                     789*******************.******998.77 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.06E-11146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-4120IPR009057Homeodomain-like
PROSITE profilePS5129410.482953IPR017930Myb domain
PfamPF002492.8E-71446IPR001005SANT/Myb domain
CDDcd001672.88E-61746No hitNo description
Gene3DG3DSA:1.10.10.603.9E-82146IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
RRRWFTYLNS DFKRGGWSPE EDVLLCEAQK IFGNRWTEIA KVVSGRGMFL KKDDPKVLAL  60
MQQAELLSSL AMKVNSEKTD HSFESAWTAL EDFLKQNKGN ELKACRNSDT DFELGVEDLH  120
SCNDGSKPDI YDSSPASSEY STGSTLPSIL LCDDKAEEEC PGEIWENMVA YTDAKYNEYP  180
PNTEFDSPIH VTPLFRTLAA AIPSPKFSES EKHFLMKTLG IETTSPTPIT NPSQPPACKR  240
SLLHCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847460.12e-97PREDICTED: myb-related protein B
TrEMBLS8DRZ60.0S8DRZ6_9LAMI; Uncharacterized protein (Fragment)
STRINGBra019658.1-P6e-56(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41242134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.22e-58MYB family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]